IL_6RI5_099
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- 6RI5|1|A|A|2626
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RI5_099 not in the Motif Atlas
- Homologous match to IL_5TBW_098
- Geometric discrepancy: 0.1226
- The information below is about IL_5TBW_098
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6RI5|1|A|G|2614
6RI5|1|A|G|2615
*
6RI5|1|A|C|2625
6RI5|1|A|A|2626
6RI5|1|A|C|2627
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L29
- Chain l
- 60S ribosomal protein L42-A
- Chain q
- 60S ribosomal protein L10
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