IL_6RI5_108

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_108 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1148

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6RI5|1|A|U|2835
6RI5|1|A|C|2836
6RI5|1|A|A|2837
6RI5|1|A|A|2838
6RI5|1|A|G|2839
*
6RI5|1|A|C|2849
6RI5|1|A|G|2850
6RI5|1|A|A|2851
6RI5|1|A|C|2852
6RI5|1|A|A|2853

Current chains

Chain A

25S RNA

Nearby chains

Chain q

60S ribosomal protein L10

Chain t

Ubiquitin-60S ribosomal protein L40