IL_6RI5_109

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_109 not in the Motif Atlas

Homologous match to IL_8C3A_115

Geometric discrepancy: 0.1259

The information below is about IL_8C3A_115

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6RI5|1|A|C|2876
6RI5|1|A|G|2877
*
6RI5|1|A|U|2949
6RI5|1|A|G|2950
6RI5|1|A|G|2951

Current chains

Chain A

25S RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain z

Cytoplasmic 60S subunit biogenesis factor REH1