IL_6RI5_114
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAU*ACC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RI5_114 not in the Motif Atlas
- Homologous match to IL_8C3A_120
- Geometric discrepancy: 0.1083
- The information below is about IL_8C3A_120
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6RI5|1|A|G|2918
6RI5|1|A|A|2919
6RI5|1|A|U|2920
*
6RI5|1|A|A|2926
6RI5|1|A|C|2927
6RI5|1|A|C|2928
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 60S ribosomal protein L3
- Chain L
- 60S ribosomal protein L23-A
- Chain o
- Large subunit GTPase 1
- Chain w
- 60S ribosomal export protein NMD3
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