IL_6RI5_132

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6RI5|1|A|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_132 not in the Motif Atlas

Geometric match to IL_4WF9_088

Geometric discrepancy: 0.3218

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6RI5|1|A|G|3340
6RI5|1|A|U|3341
6RI5|1|A|A|3342
*
6RI5|1|A|U|3363
6RI5|1|A|C|3364

Current chains

Chain A

25S RNA

Nearby chains

Chain v

60S ribosomal protein L24-A