IL_6RI5_143
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GU*AUC
- Length
- 5 nucleotides
- Bulged bases
- 6RI5|1|y|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RI5_143 not in the Motif Atlas
- Homologous match to IL_5TBW_146
- Geometric discrepancy: 0.1275
- The information below is about IL_5TBW_146
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6RI5|1|y|G|68
6RI5|1|y|U|69
*
6RI5|1|y|A|89
6RI5|1|y|U|90
6RI5|1|y|C|91
Current chains
- Chain y
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L26-A
- Chain Z
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L39
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