IL_6RJA_004

3D structure

PDB id

6RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of St1Cas9-sgRNA-tDNA20-AcrIIA6 dimeric assembly.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

6RJA|1|G|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RJA_004 not in the Motif Atlas

Geometric match to IL_6M0X_002

Geometric discrepancy: 0.1777

The information below is about IL_6M0X_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6RJA|1|G|C|72
6RJA|1|G|U|73
*
6RJA|1|G|A|76
6RJA|1|G|U|77
6RJA|1|G|G|78

Current chains

Chain G

RNA (78-MER)

Nearby chains

Chain B

AcrIIA6

Chain F

CRISPR-associated endonuclease Cas9