IL_6RJD_001

3D structure

PDB id

6RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of St1Cas9-sgRNA-tDNA59-ntPAM complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACU*AAGCU

Length

8 nucleotides

Bulged bases

6RJD|1|D|G|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RJD_001 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.3819

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6RJD|1|D|A|29
6RJD|1|D|C|30
6RJD|1|D|U|31
*
6RJD|1|D|A|55
6RJD|1|D|A|56
6RJD|1|D|G|57
6RJD|1|D|C|58
6RJD|1|D|U|59

Current chains

Chain D

sgRNA (78-MER)

Nearby chains

Chain C

Streptococcus Thermophilus 1 Cas9