IL_6RM3_002

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGGAUC*GUGAAAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_002 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.1747

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6RM3|1|L50|U|14
6RM3|1|L50|G|15
6RM3|1|L50|G|16
6RM3|1|L50|G|17
6RM3|1|L50|A|18
6RM3|1|L50|U|19
6RM3|1|L50|C|20
*
6RM3|1|L50|G|396
6RM3|1|L50|U|397
6RM3|1|L50|G|398
6RM3|1|L50|A|399
6RM3|1|L50|A|400
6RM3|1|L50|A|401
6RM3|1|L50|A|402

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LC0

uL4

Chain LEE

eL32

Chain LP0

uL22