IL_6RM3_003

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6RM3|1|L50|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_003 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.21

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6RM3|1|L50|G|26
6RM3|1|L50|A|27
*
6RM3|1|L50|U|363
6RM3|1|L50|A|364
6RM3|1|L50|C|365

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LC0

uL4

Chain LY0

uL24