IL_6RM3_014

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUU*AUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_014 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.1523

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6RM3|1|L50|C|595
6RM3|1|L50|A|596
6RM3|1|L50|U|597
6RM3|1|L50|U|598
*
6RM3|1|L50|A|614
6RM3|1|L50|U|615
6RM3|1|L50|G|616

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LJJ

eL37