IL_6RM3_016

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*CAAUC

Length

8 nucleotides

Bulged bases

6RM3|1|L50|U|634, 6RM3|1|L50|A|646, 6RM3|1|L50|A|647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_016 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.0964

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

6RM3|1|L50|G|633
6RM3|1|L50|U|634
6RM3|1|L50|G|635
*
6RM3|1|L50|C|645
6RM3|1|L50|A|646
6RM3|1|L50|A|647
6RM3|1|L50|U|648
6RM3|1|L50|C|649

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LG0

eL8

Chain LJJ

eL37

Chain LN0

eL15

Chain LP0

uL22