IL_6RM3_021

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_021 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.5145

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6RM3|1|L50|G|724
6RM3|1|L50|G|725
*
6RM3|1|L50|C|757
6RM3|1|L50|U|758
6RM3|1|L50|U|759

Current chains

Chain L50

23S rRNA

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LD0

uL18

Chain LI0

uL16

Chain LT0

eL21