IL_6RM3_028

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

6RM3|1|L50|U|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_028 not in the Motif Atlas

Geometric match to IL_5TBW_050

Geometric discrepancy: 0.2318

The information below is about IL_5TBW_050

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6RM3|1|L50|A|882
6RM3|1|L50|U|883
6RM3|1|L50|A|884
*
6RM3|1|L50|U|1022
6RM3|1|L50|U|1023

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LF0

uL30

Chain LFF

eL33

Chain LO0

uL13

Chain LS0

eL20