IL_6RM3_029

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_029 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.356

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6RM3|1|L50|A|884
6RM3|1|L50|G|885
*
6RM3|1|L50|C|1020
6RM3|1|L50|U|1021
6RM3|1|L50|U|1022

Current chains

Chain L50

23S rRNA

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LF0

uL30

Chain LFF

eL33

Chain LM0

eL14

Chain LO0

uL13

Chain LS0

eL20