IL_6RM3_031

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

6RM3|1|L50|G|910

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_031 not in the Motif Atlas

Geometric match to IL_4LVW_002

Geometric discrepancy: 0.2905

The information below is about IL_4LVW_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6RM3|1|L50|U|909
6RM3|1|L50|G|910
6RM3|1|L50|A|911
*
6RM3|1|L50|U|992
6RM3|1|L50|A|993

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LH0

uL6

Chain LI0

uL16

Chain LM0

eL14

Chain LS0

eL20

Chain LT0

eL21