IL_6RM3_033

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_033 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.2246

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6RM3|1|L50|U|1069
6RM3|1|L50|G|1070
6RM3|1|L50|U|1071
*
6RM3|1|L50|A|1101
6RM3|1|L50|G|1102
6RM3|1|L50|A|1103

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LC0

uL4

Chain LE0

eL6

Chain LEE

eL32

Chain LY0

uL24