IL_6RM3_052

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6RM3|1|L50|A|2077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_052 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.1295

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6RM3|1|L50|G|1773
6RM3|1|L50|A|1774
*
6RM3|1|L50|U|2076
6RM3|1|L50|A|2077
6RM3|1|L50|C|2078
6RM3|1|L50|C|2079

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LNN

MDF2