IL_6RM3_061

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUA*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_061 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.1817

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6RM3|1|L50|G|2097
6RM3|1|L50|U|2098
6RM3|1|L50|A|2099
*
6RM3|1|L50|U|2127
6RM3|1|L50|U|2128
6RM3|1|L50|U|2129
6RM3|1|L50|U|2130
6RM3|1|L50|U|2131

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LI0

uL16