IL_6RM3_062

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAG*CGACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_062 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1714

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6RM3|1|L50|G|2104
6RM3|1|L50|C|2105
6RM3|1|L50|A|2106
6RM3|1|L50|A|2107
6RM3|1|L50|G|2108
*
6RM3|1|L50|C|2118
6RM3|1|L50|G|2119
6RM3|1|L50|A|2120
6RM3|1|L50|C|2121
6RM3|1|L50|U|2122

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LI0

uL16

Chain LMM

eL40