IL_6RM3_066

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UC*GAAG

Length

6 nucleotides

Bulged bases

6RM3|1|L50|A|2180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_066 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.3237

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6RM3|1|L50|U|2160
6RM3|1|L50|C|2161
*
6RM3|1|L50|G|2178
6RM3|1|L50|A|2179
6RM3|1|L50|A|2180
6RM3|1|L50|G|2181

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LH0

uL6