IL_6RM3_069

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_069 not in the Motif Atlas

Geometric match to IL_4E48_003

Geometric discrepancy: 0.141

The information below is about IL_4E48_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6RM3|1|L50|U|2280
6RM3|1|L50|U|2281
6RM3|1|L50|G|2282
*
6RM3|1|L50|C|2300
6RM3|1|L50|U|2301
6RM3|1|L50|A|2302

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LB0

uL3

Chain LH0

uL6

Chain LV0

uL14