IL_6RM3_074

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUUAA*UGAAGC

Length

12 nucleotides

Bulged bases

6RM3|1|L50|A|2392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_074 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.1489

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6RM3|1|L50|G|2363
6RM3|1|L50|A|2364
6RM3|1|L50|U|2365
6RM3|1|L50|U|2366
6RM3|1|L50|A|2367
6RM3|1|L50|A|2368
*
6RM3|1|L50|U|2389
6RM3|1|L50|G|2390
6RM3|1|L50|A|2391
6RM3|1|L50|A|2392
6RM3|1|L50|G|2393
6RM3|1|L50|C|2394

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LH0

uL6

Chain LMM

eL40

Chain LO0

uL13