IL_6RM3_077

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_077 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1799

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6RM3|1|L50|G|2451
6RM3|1|L50|A|2452
6RM3|1|L50|A|2453
6RM3|1|L50|G|2454
*
6RM3|1|L50|C|2463
6RM3|1|L50|G|2464
6RM3|1|L50|A|2465
6RM3|1|L50|C|2466

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LR0

eL19

Chain LU0

eL22

Chain SI0

eS8