IL_6RM3_147

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAUUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6RM3|1|L50|G|1694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_147 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.1389

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6RM3|1|L50|G|1433
6RM3|1|L50|G|1434
6RM3|1|L50|A|1435
6RM3|1|L50|A|1436
6RM3|1|L50|U|1437
6RM3|1|L50|U|1438
6RM3|1|L50|C|1439
6RM3|1|L50|G|1440
6RM3|1|L50|G|1441
*
6RM3|1|L50|C|1692
6RM3|1|L50|U|1693
6RM3|1|L50|G|1694
6RM3|1|L50|U|1695
6RM3|1|L50|C|1696

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LB0

uL3

Chain LV0

uL14