IL_6RTI_007

3D structure

PDB id

6RTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with aptamer A9g

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

(UFT)A(CFZ)*GAAAAA

Length

9 nucleotides

Bulged bases

6RTI|1|X|A|8||A, 6RTI|1|X|A|10

QA status

Modified nucleotides: UFT, CFZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85993.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6RTI|1|X|UFT|35
6RTI|1|X|A|36
6RTI|1|X|CFZ|37
*
6RTI|1|X|G|7||A
6RTI|1|X|A|8||A
6RTI|1|X|A|9||A
6RTI|1|X|A|10
6RTI|1|X|A|11
6RTI|1|X|A|12

Current chains

Chain X

Aptamer A9g, RNA (43-MER)

Nearby chains

Chain A

Glutamate carboxypeptidase 2