IL_6RW4_034

3D structure

PDB id

6RW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

6RW4|1|A|A|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RW4_034 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.1148

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6RW4|1|A|C|1265
6RW4|1|A|A|1266
*
6RW4|1|A|U|1325
6RW4|1|A|A|1326
6RW4|1|A|G|1327

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain C

28S ribosomal protein S24, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain H

28S ribosomal protein S10, mitochondrial

Chain K

28S ribosomal protein S14, mitochondrial