IL_6RW4_040

3D structure

PDB id

6RW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

G(B8T)C(5MC)G*CGUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RW4_040 not in the Motif Atlas

Homologous match to IL_6CZR_166

Geometric discrepancy: 0.134

The information below is about IL_6CZR_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RW4|1|A|G|1485
6RW4|1|A|B8T|1486
6RW4|1|A|C|1487
6RW4|1|A|5MC|1488
6RW4|1|A|G|1489
*
6RW4|1|A|C|1561
6RW4|1|A|G|1562
6RW4|1|A|U|1563
6RW4|1|A|A|1564
6RW4|1|A|A|1565
6RW4|1|A|C|1566

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 8

Translation initiation factor IF-3, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial