IL_6RW5_041

3D structure

PDB id

6RW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RW5_041 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.1436

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6RW5|1|A|G|1489
6RW5|1|A|U|1490
6RW5|1|A|C|1491
*
6RW5|1|A|G|1559
6RW5|1|A|U|1560
6RW5|1|A|C|1561

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain 8

Translation initiation factor IF-3, mitochondrial