IL_6RXU_004

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_004 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1071

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6RXU|1|C1|C|82
6RXU|1|C1|A|83
6RXU|1|C1|A|84
*
6RXU|1|C1|U|123
6RXU|1|C1|C|124
6RXU|1|C1|G|125

Current chains

Chain C1

35S rRNA

Nearby chains

Chain UO

Utp15

Chain UQ

Utp17