IL_6RXU_007

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACC*GACU

Length

7 nucleotides

Bulged bases

6RXU|1|C1|C|136, 6RXU|1|C1|A|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RXU|1|C1|A|135
6RXU|1|C1|C|136
6RXU|1|C1|C|137
*
6RXU|1|C1|G|201
6RXU|1|C1|A|202
6RXU|1|C1|C|203
6RXU|1|C1|U|204

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CE

Snu13

Chain UD

Utp4

Chain UK

U3 small nucleolar RNA-associated protein 11

Chain UO

Utp15

Chain UR

Utp18