IL_6RXU_009
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCC*GCAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_009 not in the Motif Atlas
- Geometric match to IL_3BNR_008
- Geometric discrepancy: 0.2928
- The information below is about IL_3BNR_008
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_60988.2
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6RXU|1|C1|G|144
6RXU|1|C1|C|145
6RXU|1|C1|C|146
6RXU|1|C1|C|147
*
6RXU|1|C1|G|190
6RXU|1|C1|C|191
6RXU|1|C1|A|192
6RXU|1|C1|U|193
6RXU|1|C1|C|194
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CB
- Nop1
- Chain UD
- Utp4
- Chain UP
- Utp16
- Chain UR
- Utp18
Coloring options: