IL_6RXU_017
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UA*UCG
- Length
- 5 nucleotides
- Bulged bases
- 6RXU|1|C1|C|339
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_017 not in the Motif Atlas
- Geometric match to IL_3HHN_003
- Geometric discrepancy: 0.3346
- The information below is about IL_3HHN_003
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 60
Unit IDs
6RXU|1|C1|U|301
6RXU|1|C1|A|302
*
6RXU|1|C1|U|338
6RXU|1|C1|C|339
6RXU|1|C1|G|340
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CJ
- Imp3
- Chain CL
- Putative U3 small nucleolar ribonucleoprotein protein
- Chain CU
- Faf1
- Chain UG
- Utp7
- Chain UN
- Utp14
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