IL_6RXU_021

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUAG*CGACAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RXU|1|C1|C|358
6RXU|1|C1|C|359
6RXU|1|C1|U|360
6RXU|1|C1|A|361
6RXU|1|C1|G|362
*
6RXU|1|C1|C|405
6RXU|1|C1|G|406
6RXU|1|C1|A|407
6RXU|1|C1|C|408
6RXU|1|C1|A|409
6RXU|1|C1|G|410

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CI

Bms1

Chain CT

Fcf2

Chain UK

U3 small nucleolar RNA-associated protein 11