IL_6RXU_033

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_033 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.1286

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6RXU|1|C1|U|622
6RXU|1|C1|C|623
6RXU|1|C1|U|624
*
6RXU|1|C1|A|1055
6RXU|1|C1|U|1056
6RXU|1|C1|A|1057

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CI

Bms1

Chain CY

U3 small nucleolar ribonucleoprotein protein lcp5-like protein

Chain Cg

40S ribosomal protein s9-like protein