IL_6RXU_036
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_036 not in the Motif Atlas
- Homologous match to IL_4V88_389
- Geometric discrepancy: 0.1414
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
6RXU|1|C1|U|645
6RXU|1|C1|C|646
6RXU|1|C1|U|647
6RXU|1|C1|A|648
6RXU|1|C1|A|649
6RXU|1|C1|G|650
*
6RXU|1|C1|C|673
6RXU|1|C1|U|674
6RXU|1|C1|G|675
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain Cb
- 40S ribosomal protein S4
- Chain Cd
- 40S ribosomal protein S6
- Chain UT
- Utp20
Coloring options: