IL_6RXU_040
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_040 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.1544
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
6RXU|1|C1|U|703
6RXU|1|C1|U|704
6RXU|1|C1|A|705
6RXU|1|C1|U|706
6RXU|1|C1|U|707
6RXU|1|C1|U|708
*
6RXU|1|C1|A|879
6RXU|1|C1|U|880
6RXU|1|C1|U|881
6RXU|1|C1|C|882
6RXU|1|C1|A|883
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain Cb
- 40S ribosomal protein S4
- Chain Cf
- 40S ribosomal protein S8
Coloring options: