IL_6RXU_049
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 6RXU|1|C1|U|904, 6RXU|1|C1|C|905
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_049 not in the Motif Atlas
- Homologous match to IL_8P9A_392
- Geometric discrepancy: 0.2918
- The information below is about IL_8P9A_392
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01372.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6RXU|1|C1|U|902
6RXU|1|C1|U|903
6RXU|1|C1|U|904
6RXU|1|C1|C|905
6RXU|1|C1|G|906
6RXU|1|C1|A|907
*
6RXU|1|C1|U|929
6RXU|1|C1|G|930
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CP
- KRR1 small subunit processome component
- Chain CW
- Ribosome biogenesis protein ENP2
- Chain CZ
- Bfr2
- Chain Cf
- 40S ribosomal protein S8
- Chain Ck
- 40S ribosomal protein S11-like protein
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