IL_6RXU_050

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_050 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.2236

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6RXU|1|C1|G|973
6RXU|1|C1|G|974
6RXU|1|C1|A|975
*
6RXU|1|C1|U|990
6RXU|1|C1|A|991
6RXU|1|C1|C|992

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CW

Ribosome biogenesis protein ENP2

Chain Cd

40S ribosomal protein S6

Chain Cf

40S ribosomal protein S8