IL_6RXU_056
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAG*CGAGGAAC
- Length
- 11 nucleotides
- Bulged bases
- 6RXU|1|C1|A|1125, 6RXU|1|C1|A|1126
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_056 not in the Motif Atlas
- Geometric match to IL_8VTW_081
- Geometric discrepancy: 0.234
- The information below is about IL_8VTW_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
6RXU|1|C1|G|1098
6RXU|1|C1|A|1099
6RXU|1|C1|G|1100
*
6RXU|1|C1|C|1120
6RXU|1|C1|G|1121
6RXU|1|C1|A|1122
6RXU|1|C1|G|1123
6RXU|1|C1|G|1124
6RXU|1|C1|A|1125
6RXU|1|C1|A|1126
6RXU|1|C1|C|1127
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CI
- Bms1
- Chain CY
- U3 small nucleolar ribonucleoprotein protein lcp5-like protein
- Chain Cg
- 40S ribosomal protein s9-like protein
- Chain UC
- Utp3
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