IL_6RXU_070
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 6RXU|1|C1|G|1498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_070 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.267
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6RXU|1|C1|U|1478
6RXU|1|C1|U|1479
6RXU|1|C1|G|1480
6RXU|1|C1|U|1481
6RXU|1|C1|C|1482
6RXU|1|C1|A|1483
6RXU|1|C1|G|1484
*
6RXU|1|C1|C|1495
6RXU|1|C1|U|1496
6RXU|1|C1|U|1497
6RXU|1|C1|G|1498
6RXU|1|C1|G|1499
6RXU|1|C1|A|1500
6RXU|1|C1|U|1501
6RXU|1|C1|U|1502
6RXU|1|C1|U|1503
6RXU|1|C1|A|1504
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain Ca
- 40S ribosomal protein S1
- Chain Ci
- 40S ribosomal protein S14-like protein
- Chain UM
- Utp13
Coloring options: