IL_6RXU_084

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUCCAUUUAC*GUGGC

Length

16 nucleotides

Bulged bases

6RXU|1|C2|G|189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RXU|1|C2|G|115
6RXU|1|C2|G|116
6RXU|1|C2|U|117
6RXU|1|C2|C|118
6RXU|1|C2|C|119
6RXU|1|C2|A|123
6RXU|1|C2|U|124
6RXU|1|C2|U|125
6RXU|1|C2|U|126
6RXU|1|C2|A|127
6RXU|1|C2|C|128
*
6RXU|1|C2|G|186
6RXU|1|C2|U|187
6RXU|1|C2|G|188
6RXU|1|C2|G|189
6RXU|1|C2|C|190

Current chains

Chain C2

U3 snoRNA

Nearby chains

Chain CC

Nop56

Chain CF

Snu13

Chain CG

Rrp9