IL_6RZZ_129

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6RZZ|1|A|U|3354, 6RZZ|1|A|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RZZ_129 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2173

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6RZZ|1|A|C|3349
6RZZ|1|A|C|3350
*
6RZZ|1|A|G|3353
6RZZ|1|A|U|3354
6RZZ|1|A|U|3355
6RZZ|1|A|G|3356

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain u

Cytoplasmic 60S subunit biogenesis factor REI1