IL_6S0K_009

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0K_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.1934

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6S0K|1|A|C|274
6S0K|1|A|C|275
6S0K|1|A|U|276
6S0K|1|A|G|277
6S0K|1|A|A|278
6S0K|1|A|A|279
6S0K|1|A|U|280
6S0K|1|A|C|281
*
6S0K|1|A|G|359
6S0K|1|A|U|360
6S0K|1|A|G|361
6S0K|1|A|A|362
6S0K|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains