3D structure

PDB id
6S0K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome nascent chain in complex with SecA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
6S0K|1|A|A|504, 6S0K|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S0K_011 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.071
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

6S0K|1|A|G|481
6S0K|1|A|A|482
6S0K|1|A|A|483
6S0K|1|A|C|484
*
6S0K|1|A|G|496
6S0K|1|A|A|497
6S0K|1|A|G|498
6S0K|1|A|U|499
6S0K|1|A|G|500
6S0K|1|A|A|501
6S0K|1|A|A|502
6S0K|1|A|A|503
6S0K|1|A|A|504
6S0K|1|A|A|505
6S0K|1|A|G|506
6S0K|1|A|A|507
6S0K|1|A|A|508
6S0K|1|A|C|509

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain T
50S ribosomal protein L22
Chain V
50S ribosomal protein L24
Chain k
Cytoskeleton protein RodZ

Coloring options:


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