3D structure

PDB id
6S0K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome nascent chain in complex with SecA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCUUGAUGUGUAGGAUAGGU*ACCCUUUAAUG
Length
31 nucleotides
Bulged bases
6S0K|1|A|U|2111, 6S0K|1|A|U|2118, 6S0K|1|A|A|2119
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6S0K|1|A|C|2103
6S0K|1|A|C|2104
6S0K|1|A|U|2105
6S0K|1|A|U|2106
6S0K|1|A|G|2107
6S0K|1|A|A|2108
6S0K|1|A|U|2109
6S0K|1|A|G|2110
6S0K|1|A|U|2111
6S0K|1|A|G|2112
6S0K|1|A|U|2113
6S0K|1|A|A|2114
6S0K|1|A|G|2115
6S0K|1|A|G|2116
6S0K|1|A|A|2117
6S0K|1|A|U|2118
6S0K|1|A|A|2119
6S0K|1|A|G|2120
6S0K|1|A|G|2121
6S0K|1|A|U|2122
*
6S0K|1|A|A|2176
6S0K|1|A|C|2177
6S0K|1|A|C|2178
6S0K|1|A|C|2179
6S0K|1|A|U|2180
6S0K|1|A|U|2181
6S0K|1|A|U|2182
6S0K|1|A|A|2183
6S0K|1|A|A|2184
6S0K|1|A|U|2185
6S0K|1|A|G|2186

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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