IL_6S0K_083

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6S0K|1|A|U|2131, 6S0K|1|A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0K_083 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.259

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6S0K|1|A|C|2129
6S0K|1|A|U|2130
6S0K|1|A|U|2131
6S0K|1|A|U|2132
6S0K|1|A|G|2133
6S0K|1|A|A|2134
6S0K|1|A|A|2135
6S0K|1|A|G|2136
*
6S0K|1|A|U|2155
6S0K|1|A|G|2156
6S0K|1|A|G|2157
6S0K|1|A|A|2158
6S0K|1|A|G|2159

Current chains

Chain A

23S ribosomal RNA

Nearby chains