IL_6S0Z_051

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAAGG*CUGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0Z_051 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3785

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6S0Z|1|A|G|1518
6S0Z|1|A|U|1519
6S0Z|1|A|A|1520
6S0Z|1|A|A|1521
6S0Z|1|A|G|1522
6S0Z|1|A|G|1523
*
6S0Z|1|A|C|1557
6S0Z|1|A|U|1558
6S0Z|1|A|G|1559
6S0Z|1|A|A|1560
6S0Z|1|A|G|1561
6S0Z|1|A|C|1562

Current chains

Chain A

23S ribosomal RNA

Nearby chains