IL_6S47_003

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6S47|1|AA|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_003 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1471

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6S47|1|AA|A|13
6S47|1|AA|U|14
6S47|1|AA|C|15
*
6S47|1|AC|G|144
6S47|1|AC|U|145

Current chains

Chain AA

28S ribosomal RNA

Chain AC

5.8S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L8-A

Chain AP

60S ribosomal protein L15-A

Chain AZ

60S ribosomal protein L25