IL_6S47_005
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6S47|1|AA|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0673
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6S47|1|AA|C|31
6S47|1|AA|U|32
6S47|1|AA|G|33
6S47|1|AA|A|34
6S47|1|AA|A|35
6S47|1|AA|C|36
6S47|1|AA|U|37
6S47|1|AA|U|38
*
6S47|1|AA|A|45
6S47|1|AA|U|46
6S47|1|AA|C|47
6S47|1|AA|A|48
6S47|1|AA|A|49
6S47|1|AA|U|50
6S47|1|AA|A|51
6S47|1|AA|A|52
6S47|1|AA|G|53
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AN
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L15-A
- Chain Ac
- 60S ribosomal protein L28
- Chain Al
- 60S ribosomal protein L37-A
- Chain Aq
- 60S ribosomal protein L42-A
Coloring options: